PathwayLab
Mathematica® Export
PathwayLab
integrated with Mathematica provides a powerful environment for
modeling and computational analysis of biochemical reaction networks.
A
pathway model defined in PathwayLab can be exported to a Mathematica
m-file as a pathway model object. The PathwayLab application package
for Mathematica allows even more advanced and customizable
computational analysis such as transient and steady state analysis, stability
analysis, sensitivity analysis, and parameter estimation.
Key Benefits and
Capabilities
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Access Mathematica's advanced numerical, symbolic, and graphical
capabilities for analyzing complex systems biology models
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Reduce error prone model authoring using a state of the art modeling
environment for biological systems
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Capitalize on Mathematica's advanced file export (XML)
features to transform your pathway models into high
quality reports and graphics ready for publication
A cell cycle model in the PathwayLab modeling environment is further
analyzed and documented in Mathematica
Mathematica Notebooks
Included in PathwayLab Illustrate:
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Time course simulation for transient analysis
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Approximate and exact steady state computations
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Linearization of non-linear models
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Non-linear stability analysis
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Stoichiometric matrix computations
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Parameter sweeping
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Model reduction utilizing moiety conservation relations
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Symbolic transformations of reaction rate equations
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Formatting reaction rate equations using standard mathematical notation
Summary of Functions in the PathwayLab Application Package
